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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs7224737 1 rs2240010 chr17:40278081 DHX58 chr17:40253422-40264751:- -0.25 -4.56 6.82E-6 Fibrinogen levels
BLCA cis rs4803468 1 rs2241706 chr19:41912807 B3GNT8 chr19:41931265-41934635:- -0.22 -4.1 5.13E-5 Height
BLCA cis rs4803468 1 rs2241709 chr19:41912250 B3GNT8 chr19:41931265-41934635:- -0.2 -3.84 0.000143 Height
BLCA cis rs4803468 1 rs2241710 chr19:41912092 B3GNT8 chr19:41931265-41934635:- -0.22 -4.1 5.15E-5 Height
BLCA cis rs4803468 1 rs2241711 chr19:41911980 B3GNT8 chr19:41931265-41934635:- -0.22 -4.1 4.98E-5 Height
BLCA cis rs2273 1 rs2242471 chr4:76878716 NAAA chr4:76831809-76862166:- 0.38 6.23 1.23E-9 Longevity
BLCA cis rs2273 1 rs2242473 chr4:76878956 NAAA chr4:76831809-76862166:- 0.38 6.23 1.23E-9 Longevity
BLCA cis rs2273 1 rs2242474 chr4:76878982 NAAA chr4:76831809-76862166:- 0.38 6.23 1.23E-9 Longevity
BLCA cis rs2243480 1 rs2243480 chr7:65599196 CCT6P1 chr7:65216092-65228661:+ 0.32 4.47 1.03E-5 Diabetic kidney disease
BLCA cis rs2251844 1 rs2245715 chr15:43818052 ADAL chr15:43622872-43646094:+ -0.42 -5.15 4.21E-7 Tumor biomarkers
BLCA cis rs2251844 1 rs2245715 chr15:43818052 CATSPER2 chr15:43922774-43959900:- -0.31 -4.74 3.09E-6 Tumor biomarkers
BLCA cis rs9369898 1 rs2251115 chr6:49446509 CENPQ chr6:49431096-49460820:+ -0.38 -8.23 3.02E-15 Homocysteine levels
BLCA cis rs2251844 1 rs2251844 chr15:43836478 ADAL chr15:43622872-43646094:+ -0.43 -5.36 1.46E-7 Tumor biomarkers
BLCA cis rs2251844 1 rs2251844 chr15:43836478 CATSPER2 chr15:43922774-43959900:- -0.31 -4.84 1.86E-6 Tumor biomarkers
BLCA cis rs2251844 1 rs2255042 chr15:43834318 ADAL chr15:43622872-43646094:+ 0.45 5.55 5.22E-8 Tumor biomarkers